STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4387PFAM: regulatory protein ArsR; KEGG: sse:Ssed_0574 transcriptional regulator, ArsR family. (115 aa)    
Predicted Functional Partners:
Swoo_4386
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sse:Ssed_0575 arsenical-resistance protein.
 
  
 0.730
Swoo_2168
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sse:Ssed_2438 arsenate reductase.
     
 0.677
Swoo_0716
PFAM: phosphate transporter; KEGG: sse:Ssed_3844 phosphate transporter.
      
 0.621
Swoo_1169
PFAM: Citrate transporter; KEGG: sse:Ssed_1087 citrate transporter.
  
  
 0.589
Swoo_1498
PFAM: permease; KEGG: vfi:VFA0175 hypothetical membrane spanning protein.
 
   
 0.589
Swoo_4385
KEGG: sse:Ssed_0576 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.574
Swoo_1137
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sse:Ssed_1068 2-ketoglutarate: NADP oxidoreductase, alpha subunit.
 
   
 0.475
Swoo_3191
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sse:Ssed_1485 copper-translocating P-type ATPase.
 
  
 0.422
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.