Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4388PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sse:Ssed_0572 peptidase U62, modulator of DNA gyrase. (446 aa)    
Predicted Functional Partners:
Swoo_4395
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sse:Ssed_0565 peptidase U62, modulator of DNA gyrase.
 
 
 0.984
Swoo_4389
PFAM: protein of unknown function DUF615; KEGG: sse:Ssed_0571 protein of unknown function DUF615; Belongs to the UPF0307 family.
  
    0.611
Swoo_2736
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sse:Ssed_1852 prolyl oligopeptidase.
      
 0.551
Swoo_0036
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
     
 0.452
Swoo_4397
KEGG: sse:Ssed_0563 hypothetical protein.
 
   
 0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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