Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_4391PFAM: ABC-2 type transporter; KEGG: shm:Shewmr7_0490 hypothetical protein. (384 aa)    
Predicted Functional Partners:
Swoo_4393
PFAM: secretion protein HlyD family protein; KEGG: son:SO_4089 HlyD family secretion protein.
 
  
 0.952
Swoo_4394
PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_3640 outer membrane efflux protein.
 
   
 0.939
Swoo_4392
PFAM: ABC-2 type transporter; KEGG: son:SO_4088 conserved hypothetical protein.
 
    
0.851
Swoo_4361
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0587 hypothetical protein.
 
  
 0.780
Swoo_4362
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0586 ABC transporter-related protein.
 
  
 0.766
Swoo_3928
PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: spl:Spea_3253 protein of unknown function DUF181.
  
  
 0.534
Swoo_4395
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sse:Ssed_0565 peptidase U62, modulator of DNA gyrase.
       0.422
Swoo_0947
PFAM: nitroreductase; KEGG: saz:Sama_2969 nitroreductase.
  
    0.413
Swoo_1122
PFAM: nitroreductase; KEGG: nmr:Nmar_1696 nitroreductase.
  
    0.413
Swoo_1863
TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: cps:CPS_2468 nitroreductase family protein.
  
    0.413
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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