STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4394PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_3640 outer membrane efflux protein. (465 aa)    
Predicted Functional Partners:
Swoo_4393
PFAM: secretion protein HlyD family protein; KEGG: son:SO_4089 HlyD family secretion protein.
 
 
 0.970
Swoo_4391
PFAM: ABC-2 type transporter; KEGG: shm:Shewmr7_0490 hypothetical protein.
 
   
 0.938
Swoo_4392
PFAM: ABC-2 type transporter; KEGG: son:SO_4088 conserved hypothetical protein.
 
   
 0.929
Swoo_4361
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0587 hypothetical protein.
 
 
 0.709
Swoo_1024
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0975 secretion protein HlyD family protein.
 
 
 0.634
Swoo_0185
KEGG: sse:Ssed_0205 putative multidrug resistance efflux pump.
 
 
 0.609
Swoo_0555
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sse:Ssed_4082 efflux transporter, RND family, MFP subunit.
 
 
 0.592
Swoo_0342
PFAM: Sporulation domain protein; KEGG: sse:Ssed_4263 sporulation domain protein.
  
     0.572
Swoo_2170
PFAM: SirA family protein; KEGG: sse:Ssed_2436 SirA family protein; Belongs to the sulfur carrier protein TusA family.
  
     0.569
Swoo_0475
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_4141 type I secretion membrane fusion protein, HlyD family.
  
 
 0.558
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.