STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4397KEGG: sse:Ssed_0563 hypothetical protein. (1392 aa)    
Predicted Functional Partners:
Swoo_4398
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: sse:Ssed_0562 ribonuclease, Rne/Rng family.
  
    0.834
Swoo_4400
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.805
Swoo_4395
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sse:Ssed_0565 peptidase U62, modulator of DNA gyrase.
 
   
 0.713
Swoo_4396
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sse:Ssed_0564 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.704
Swoo_4399
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.667
Swoo_4401
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.667
Swoo_3643
KEGG: sse:Ssed_3441 hypothetical protein.
  
     0.660
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.657
bamE
SmpA/OmlA domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.636
Swoo_4402
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: sse:Ssed_0558 cell shape determining protein, MreB/Mrl family.
       0.557
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.