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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4412KEGG: sse:Ssed_0549 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Swoo_4413
PFAM: type II secretion system protein; KEGG: sse:Ssed_0548 type II secretion system protein.
       0.722
Swoo_4420
KEGG: sse:Ssed_0541 fimbrial assembly family protein.
  
    0.649
Swoo_4421
KEGG: sse:Ssed_0540 conserved hypothetical biogenesis protein MshI.
  
    0.628
Swoo_4416
KEGG: sse:Ssed_0545 MSHA biogenesis protein MshM.
  
    0.583
Swoo_4411
KEGG: sfr:Sfri_3745 methylation site containing protein.
       0.582
Swoo_4417
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: sse:Ssed_0544 pilus (MSHA type) biogenesis protein MshL.
       0.578
Swoo_4419
KEGG: sse:Ssed_0542 MSHA biogenesis protein MshJ.
       0.578
Swoo_4418
KEGG: sse:Ssed_0543 MSHA biogenesis protein MshK.
       0.577
Swoo_4415
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0546 tetratricopeptide TPR_2 repeat protein.
       0.562
Swoo_4414
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0547 type II secretion system protein E.
       0.535
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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