STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4413PFAM: type II secretion system protein; KEGG: sse:Ssed_0548 type II secretion system protein. (406 aa)    
Predicted Functional Partners:
Swoo_4414
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0547 type II secretion system protein E.
 
 
 0.985
Swoo_4417
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: sse:Ssed_0544 pilus (MSHA type) biogenesis protein MshL.
 
  
 0.950
Swoo_0313
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0425 type IV-A pilus assembly ATPase PilB.
 
 
 0.933
Swoo_4733
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.933
Swoo_0303
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.890
Swoo_4411
KEGG: sfr:Sfri_3745 methylation site containing protein.
 
    0.873
Swoo_4421
KEGG: sse:Ssed_0540 conserved hypothetical biogenesis protein MshI.
 
 
 
 0.856
Swoo_4420
KEGG: sse:Ssed_0541 fimbrial assembly family protein.
 
 
 
 0.846
Swoo_4419
KEGG: sse:Ssed_0542 MSHA biogenesis protein MshJ.
 
  
 0.820
Swoo_1333
KEGG: sse:Ssed_1233 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
  
 0.815
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.