STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4419KEGG: sse:Ssed_0542 MSHA biogenesis protein MshJ. (218 aa)    
Predicted Functional Partners:
Swoo_4417
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: sse:Ssed_0544 pilus (MSHA type) biogenesis protein MshL.
 
  
 0.974
Swoo_4420
KEGG: sse:Ssed_0541 fimbrial assembly family protein.
 
     0.960
Swoo_4421
KEGG: sse:Ssed_0540 conserved hypothetical biogenesis protein MshI.
 
     0.960
Swoo_4415
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0546 tetratricopeptide TPR_2 repeat protein.
 
     0.957
Swoo_4416
KEGG: sse:Ssed_0545 MSHA biogenesis protein MshM.
 
    0.942
Swoo_4411
KEGG: sfr:Sfri_3745 methylation site containing protein.
 
   
 0.864
Swoo_4414
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sse:Ssed_0547 type II secretion system protein E.
 
  
 0.854
Swoo_4403
KEGG: sdn:Sden_3335 hypothetical protein.
 
   
 0.852
Swoo_4405
KEGG: slo:Shew_0400 methylation site containing protein.
 
   
 0.848
Swoo_4406
KEGG: slo:Shew_0399 methylation site containing protein.
 
   
 0.846
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.