STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4433KEGG: sfr:Sfri_3594 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Swoo_0291
KEGG: slo:Shew_3417 hypothetical protein.
  
     0.710
Swoo_0290
KEGG: shm:Shewmr7_0668 hypothetical protein.
  
     0.703
Swoo_4432
KEGG: sse:Ssed_0523 hypothetical protein.
       0.551
Swoo_3055
KEGG: sse:Ssed_1593 hypothetical protein.
  
     0.505
Swoo_0582
KEGG: vha:VIBHAR_04990 hypothetical protein.
  
     0.487
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.419
Swoo_1139
KEGG: sbl:Sbal_1120 hypothetical protein.
  
     0.414
Swoo_3013
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spl:Spea_2584 tRNA/rRNA methyltransferase (SpoU).
  
     0.404
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.