STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4434TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0511 putative tyrosine-specific transport protein. (400 aa)    
Predicted Functional Partners:
Swoo_1267
TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sse:Ssed_1172 Trp operon repressor.
  
   
 0.622
Swoo_2948
PFAM: protein of unknown function DUF1097; KEGG: sse:Ssed_1663 hypothetical protein.
  
     0.604
Swoo_2768
PFAM: protein of unknown function DUF991; KEGG: sse:Ssed_1819 protein of unknown function DUF991.
  
     0.437
Swoo_4890
KEGG: spl:Spea_0810 serine transporter.
  
     0.433
Swoo_0863
PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sse:Ssed_0858 aromatic amino acid permease.
  
     0.432
Swoo_3149
KEGG: spl:Spea_2397 putative serine transporter.
  
     0.430
Swoo_3436
PFAM: protein of unknown function DUF437; KEGG: vpa:VPA1414 hypothetical protein; Belongs to the UPF0267 family.
  
     0.426
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.