STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4436KEGG: sfr:Sfri_3100 hypothetical protein. (142 aa)    
Predicted Functional Partners:
Swoo_4435
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sse:Ssed_0510 putative lipoprotein.
       0.545
Swoo_2107
KEGG: sse:Ssed_2526 hypothetical protein.
  
     0.493
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.488
Swoo_1421
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: sse:Ssed_3204 omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.462
Swoo_2790
KEGG: sse:Ssed_1803 hypothetical protein.
  
     0.449
Swoo_0042
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_0039 microbial collagenase.
  
     0.447
Swoo_0720
KEGG: sse:Ssed_3840 hypothetical protein.
 
     0.437
Swoo_3136
PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0988 hypothetical protein.
  
     0.437
Swoo_3449
PFAM: Peptidase M9A collagenase domain protein; KEGG: sse:Ssed_3300 microbial collagenase.
  
     0.419
Swoo_1422
TIGRFAM: PfaB family protein; KEGG: sse:Ssed_3203 omega-3 polyunsaturated fatty acid synthase PfaB.
  
     0.414
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.