STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4447KEGG: sse:Ssed_0491 copper ABC transporter, permease protein. (282 aa)    
Predicted Functional Partners:
Swoo_4449
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sse:Ssed_0500 periplasmic copper-binding.
 
 
 0.989
Swoo_4450
PFAM: NosL family protein; KEGG: spl:Spea_0509 NosL family protein.
 
 
 0.987
Swoo_4448
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_0511 ABC transporter related.
 
 
 0.978
Swoo_4470
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: spl:Spea_0486 periplasmic copper-binding.
 
 
 0.954
Swoo_4471
PFAM: NosL family protein; KEGG: spl:Spea_0485 NosL family protein.
 
 
 0.945
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
  
 0.942
Swoo_4469
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_0487 ABC transporter related.
 
 
 0.903
Swoo_4468
KEGG: spl:Spea_0488 copper ABC transporter, permease protein.
  
  
 
0.902
Swoo_2054
KEGG: sse:Ssed_2612 hypothetical protein.
     
  0.900
Swoo_0761
KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein.
  
  
 0.685
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.