Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Swoo_4448PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_0511 ABC transporter related. (327 aa)    
Predicted Functional Partners:
Swoo_4447
KEGG: sse:Ssed_0491 copper ABC transporter, permease protein.
 
 
 0.973
Swoo_4449
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sse:Ssed_0500 periplasmic copper-binding.
 
  
 0.951
Swoo_4450
PFAM: NosL family protein; KEGG: spl:Spea_0509 NosL family protein.
 
  
 0.951
Swoo_4469
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_0487 ABC transporter related.
  
  
 
0.903
Swoo_4468
KEGG: spl:Spea_0488 copper ABC transporter, permease protein.
 
 
 0.890
Swoo_4363
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_0585 ABC-2 type transporter.
 
  
 0.887
Swoo_4471
PFAM: NosL family protein; KEGG: spl:Spea_0485 NosL family protein.
 
  
 0.804
Swoo_4470
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: spl:Spea_0486 periplasmic copper-binding.
 
  
 0.798
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
  
 0.764
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
    
0.679
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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