STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4451PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0508 polysulphide reductase NrfD. (315 aa)    
Predicted Functional Partners:
Swoo_4452
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0507 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.923
Swoo_4453
KEGG: sse:Ssed_0496 tetratricopeptide TPR_2 repeat protein.
 
  
 0.891
Swoo_4456
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
  
 0.886
Swoo_0240
KEGG: spl:Spea_3967 formate-dependent nitrite reductase.
 
  
 0.804
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.792
Swoo_4477
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
  
 0.758
Swoo_4473
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0483 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.685
Swoo_0241
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_3966 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.656
Swoo_0233
TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0229 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.618
Swoo_4455
SMART: Rhodanese domain protein; KEGG: spl:Spea_0504 rhodanese domain protein.
 
     0.593
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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