STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4453KEGG: sse:Ssed_0496 tetratricopeptide TPR_2 repeat protein. (234 aa)    
Predicted Functional Partners:
Swoo_4451
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0508 polysulphide reductase NrfD.
 
  
 0.891
Swoo_4456
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
  
 0.852
Swoo_4455
SMART: Rhodanese domain protein; KEGG: spl:Spea_0504 rhodanese domain protein.
 
     0.778
Swoo_0242
TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_3965 polysulphide reductase NrfD.
  
    0.738
Swoo_4477
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
    0.734
Swoo_4472
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0484 polysulphide reductase NrfD.
  
    0.724
Swoo_4454
PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: spl:Spea_0505 peptidylprolyl isomerase FKBP-type.
  
  
 0.718
Swoo_4478
TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: spl:Spea_0478 cytochrome c-type biogenesis protein CcmF.
  
 
 0.717
Swoo_2426
KEGG: sse:Ssed_2210 hypothetical protein.
  
     0.705
Swoo_3124
KEGG: spl:Spea_2697 decaheme cytochrome c.
  
 
   0.703
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.