STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4471PFAM: NosL family protein; KEGG: spl:Spea_0485 NosL family protein. (162 aa)    
Predicted Functional Partners:
Swoo_4470
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: spl:Spea_0486 periplasmic copper-binding.
 
  
 0.972
Swoo_4468
KEGG: spl:Spea_0488 copper ABC transporter, permease protein.
 
  
 0.952
Swoo_4449
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sse:Ssed_0500 periplasmic copper-binding.
 
  
 0.910
Swoo_2253
PFAM: FMN-binding domain protein; KEGG: cps:CPS_1884 putative regulatory protein NosR.
 
  
 0.904
Swoo_4469
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_0487 ABC transporter related.
 
  
 0.904
Swoo_4447
KEGG: sse:Ssed_0491 copper ABC transporter, permease protein.
 
  
 0.896
Swoo_4448
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_0511 ABC transporter related.
 
  
 0.804
Swoo_0686
PFAM: NnrS family protein; KEGG: cps:CPS_0849 putative ATP synthase F0, A subunit.
 
     0.638
Swoo_3517
PFAM: peptidase U32; KEGG: sse:Ssed_3351 peptidase U32.
  
    0.609
Swoo_3515
PFAM: Sterol-binding domain protein; KEGG: sse:Ssed_3349 hypothetical protein.
 
  
 0.511
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.