Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4472PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0484 polysulphide reductase NrfD. (315 aa)    
Predicted Functional Partners:
Swoo_4473
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0483 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.927
Swoo_0240
KEGG: spl:Spea_3967 formate-dependent nitrite reductase.
 
  
 0.846
Swoo_4477
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
  
 0.838
nrfA
Formate-dependent cytochrome c nitrite reductase, c552 subunit; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
  
 0.823
Swoo_4456
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
 
  
 0.774
Swoo_4453
KEGG: sse:Ssed_0496 tetratricopeptide TPR_2 repeat protein.
  
  
 0.726
Swoo_4476
SMART: Rhodanese domain protein; KEGG: spl:Spea_0480 rhodanese domain protein.
 
     0.713
Swoo_4452
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0507 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.688
Swoo_0241
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_3966 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.671
Swoo_0233
TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sse:Ssed_0229 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.612
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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