STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4474KEGG: spl:Spea_0482 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Swoo_4475
PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: spl:Spea_0481 peptidylprolyl isomerase FKBP-type.
  
    0.676
Swoo_4478
TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: spl:Spea_0478 cytochrome c-type biogenesis protein CcmF.
  
 
 0.582
Swoo_4656
TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: sse:Ssed_4284 cytochrome c-type biogenesis protein CcmF.
  
 
 0.582
Swoo_4476
SMART: Rhodanese domain protein; KEGG: spl:Spea_0480 rhodanese domain protein.
       0.572
Swoo_4472
PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_0484 polysulphide reductase NrfD.
  
    0.531
Swoo_4473
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: spl:Spea_0483 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.529
Swoo_4477
Cytochrome c, putative; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
  
    0.474
Swoo_4479
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.427
Swoo_4654
Cytochrome c nitrite reductase, accessory protein NrfF; Possible subunit of a heme lyase.
  
  
 0.427
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.