Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_4485Transcriptional regulator, CadC; PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sdn:Sden_3304 transcriptional regulatory protein-like protein. (520 aa)    
Predicted Functional Partners:
Swoo_1878
PFAM: protein kinase; Protein phosphatase 2C-like; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: sse:Ssed_2762 serine/threonine protein kinase.
  
 0.843
Swoo_2627
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: sse:Ssed_1963 serine/threonine protein kinase.
  
 0.843
Swoo_0073
PFAM: glycosyl transferase family 2; KEGG: sdn:Sden_0205 glycosyl transferase, family 2.
  
 
 0.790
Swoo_1858
PFAM: protein kinase; TPR repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; Tetratricopeptide domain protein; KEGG: cps:CPS_0999 serine/threonine protein kinase domain protein.
  
 
 0.769
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.759
Swoo_0567
PFAM: peptidase M48 Ste24p; KEGG: vvy:VV2911 Zn-dependent protease with chaperone function.
 
 
 
 0.756
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.729
Swoo_0456
PFAM: peptidase M48 Ste24p; KEGG: hch:HCH_01586 putative Zn-dependent protease, contains TPR repeats.
   
 
 0.720
Swoo_2169
Peptidase M48 Ste24p; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
   
 
 0.720
Swoo_2284
KEGG: bga:BG0547 hypothetical protein.
   
 
 0.720
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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