STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4488Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family. (592 aa)    
Predicted Functional Partners:
Swoo_0491
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; Na-Ca exchanger/integrin-beta4; KEGG: sbn:Sbal195_4098 outer membrane adhesin like proteiin.
 
  
 0.763
Swoo_4487
KEGG: vha:VIBHAR_05575 hypothetical protein.
       0.762
Swoo_2371
KEGG: vpa:VPA0447 hypothetical protein.
  
     0.746
Swoo_0564
PFAM: polysaccharide deacetylase; Carbohydrate-binding family V/XII; KEGG: vha:VIBHAR_03626 hypothetical protein.
 
     0.734
Swoo_4776
KEGG: sse:Ssed_4385 hypothetical protein.
   
    0.718
Swoo_1054
KEGG: spl:Spea_0899 conserved hypothetical protein.
 
 
 
 0.713
Swoo_1100
PFAM: PKD domain containing protein; glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Chitinase A domain protein; SMART: chitinase II; KEGG: sbl:Sbal_3083 chitinase.
 
     0.679
Swoo_1788
PFAM: protein of unknown function DUF692; KEGG: sse:Ssed_2857 protein of unknown function DUF692; Belongs to the UPF0276 family.
   
    0.565
Swoo_4062
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_0904 protein of unknown function DUF692; Belongs to the UPF0276 family.
   
    0.565
Swoo_4775
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sse:Ssed_4384 hypothetical protein.
   
    0.565
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.