Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Swoo_4491KEGG: sdn:Sden_2175 hypothetical protein. (359 aa)    
Predicted Functional Partners:
Swoo_2660
KEGG: spl:Spea_3159 hydrolase (secreted protein).
  
     0.513
Swoo_1352
KEGG: ava:Ava_5014 ABC-type phosphate/phosphonate transport system periplasmic component-like.
   
    0.467
Swoo_1703
KEGG: sse:Ssed_2942 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
   
    0.467
Swoo_2803
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sse:Ssed_1792 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
   
    0.467
Swoo_2011
KEGG: hau:Haur_0098 hypothetical protein.
  
     0.466
Swoo_2953
PFAM: PKD domain containing protein; peptidase M14 carboxypeptidase A; KEGG: hch:HCH_04864 predicted carboxypeptidase.
  
     0.449
Swoo_4490
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sse:Ssed_3412 peptidase S9, prolyl oligopeptidase active site domain protein.
       0.419
Swoo_3484
KEGG: sse:Ssed_3335 hypothetical protein.
  
  
 0.408
Swoo_3739
PFAM: protein of unknown function DUF805; KEGG: slo:Shew_2991 protein of unknown function DUF805.
   
    0.400
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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