Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4494KEGG: sbl:Sbal_3792 hypothetical protein. (232 aa)    
Predicted Functional Partners:
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.722
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.709
Swoo_4495
PFAM: putative esterase; KEGG: spl:Spea_0471 putative esterase.
  
    0.531
Swoo_0697
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: slo:Shew_0603 glutathione-dependent formaldehyde-activating, GFA.
  
     0.530
Swoo_4496
KEGG: spl:Spea_0472 conserved hypothetical protein.
       0.529
Swoo_0102
PFAM: ThiJ/PfpI domain protein; KEGG: sse:Ssed_0140 ThiJ/PfpI domain protein.
  
     0.461
Swoo_0211
KEGG: psb:Psyr_0006 putative phenylacetaldoxime dehydratase.
  
     0.422
Swoo_0125
PFAM: monooxygenase FAD-binding; KEGG: bme:BMEI1017 salicylate hydroxylase.
  
     0.420
Swoo_1026
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sbn:Sbal195_3775 glycerophosphoryl diester phosphodiesterase.
  
 
   0.420
Swoo_2955
PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_1661 alpha/beta hydrolase fold.
  
 
  0.420
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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