Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Swoo_4123 | Swoo_4504 | Swoo_4123 | Swoo_4504 | PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding. | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | 0.521 |
Swoo_4123 | polA | Swoo_4123 | Swoo_0060 | PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.764 |
Swoo_4503 | Swoo_4504 | Swoo_4503 | Swoo_4504 | PFAM: Endoribonuclease L-PSP; KEGG: sse:Ssed_0466 endoribonuclease, L-PSP family. | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | 0.492 |
Swoo_4504 | Swoo_4123 | Swoo_4504 | Swoo_4123 | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding. | 0.521 |
Swoo_4504 | Swoo_4503 | Swoo_4504 | Swoo_4503 | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | PFAM: Endoribonuclease L-PSP; KEGG: sse:Ssed_0466 endoribonuclease, L-PSP family. | 0.492 |
Swoo_4504 | Swoo_4505 | Swoo_4504 | Swoo_4505 | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | PFAM: band 7 protein; KEGG: sse:Ssed_0465 band 7 protein. | 0.453 |
Swoo_4504 | Swoo_4506 | Swoo_4504 | Swoo_4506 | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | PFAM: band 7 protein; KEGG: sse:Ssed_0464 band 7 protein. | 0.453 |
Swoo_4504 | hisI | Swoo_4504 | Swoo_2081 | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: sse:Ssed_2548 phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family. | 0.424 |
Swoo_4504 | polA | Swoo_4504 | Swoo_0060 | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.408 |
Swoo_4505 | Swoo_4504 | Swoo_4505 | Swoo_4504 | PFAM: band 7 protein; KEGG: sse:Ssed_0465 band 7 protein. | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | 0.453 |
Swoo_4505 | Swoo_4506 | Swoo_4505 | Swoo_4506 | PFAM: band 7 protein; KEGG: sse:Ssed_0465 band 7 protein. | PFAM: band 7 protein; KEGG: sse:Ssed_0464 band 7 protein. | 0.872 |
Swoo_4506 | Swoo_4504 | Swoo_4506 | Swoo_4504 | PFAM: band 7 protein; KEGG: sse:Ssed_0464 band 7 protein. | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | 0.453 |
Swoo_4506 | Swoo_4505 | Swoo_4506 | Swoo_4505 | PFAM: band 7 protein; KEGG: sse:Ssed_0464 band 7 protein. | PFAM: band 7 protein; KEGG: sse:Ssed_0465 band 7 protein. | 0.872 |
hisI | Swoo_4504 | Swoo_2081 | Swoo_4504 | TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: sse:Ssed_2548 phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family. | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | 0.424 |
polA | Swoo_4123 | Swoo_0060 | Swoo_4123 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding. | 0.764 |
polA | Swoo_4504 | Swoo_0060 | Swoo_4504 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2278 NUDIX hydrolase. | 0.408 |