Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4510PFAM: protein of unknown function DUF465; KEGG: sse:Ssed_0459 protein of unknown function DUF465. (73 aa)    
Predicted Functional Partners:
Swoo_3994
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: sse:Ssed_3694 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.569
Swoo_4884
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: sse:Ssed_4476 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
    0.569
Swoo_2786
PFAM: protein of unknown function DUF1414; KEGG: sse:Ssed_1809 protein of unknown function DUF1414; Belongs to the UPF0352 family.
      
 0.557
Swoo_3207
PFAM: OmpW family protein; KEGG: spc:Sputcn32_1392 OmpW family protein.
  
    0.518
Swoo_2422
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
    0.516
Swoo_2423
PFAM: Cbb3-type cytochrome oxidase component; KEGG: sse:Ssed_2213 Cbb3-type cytochrome oxidase component.
   
    0.485
Swoo_2425
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: sse:Ssed_2211 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
   
    0.441
Swoo_0053
KEGG: sse:Ssed_0090 coproporphyrinogen dehydrogenase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.433
Swoo_2424
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sse:Ssed_2212 cytochrome c oxidase, cbb3-type, subunit II.
   
    0.409
Swoo_2751
PFAM: Heme NO binding domain protein; KEGG: hch:HCH_03700 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
   
    0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.