Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4513PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: spl:Spea_0456 OmpA domain protein transmembrane region-containing protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (341 aa)    
Predicted Functional Partners:
Swoo_3272
PFAM: outer membrane chaperone Skp (OmpH); KEGG: sse:Ssed_3152 outer membrane chaperone Skp (OmpH); Belongs to the skp family.
  
 
 0.877
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.790
Swoo_2922
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.752
Swoo_4225
Protease Do; KEGG: sse:Ssed_0744 2-alkenal reductase; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.
   
 
 0.727
Swoo_4226
TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sse:Ssed_0743 2-alkenal reductase.
   
 
 0.727
Swoo_1281
PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
0.665
Swoo_2695
PFAM: 17 kDa surface antigen; KEGG: sse:Ssed_1890 17 kDa surface antigen.
   
  
 0.560
Swoo_0818
PFAM: porin Gram-negative type; KEGG: she:Shewmr4_3228 porin, gram-negative type.
   
 0.539
Swoo_1360
KEGG: sse:Ssed_1259 porin, gram-negative type.
   
 0.539
Swoo_2244
KEGG: pat:Patl_1868 hypothetical protein.
   
 0.539
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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