Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4522TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_0453 drug resistance transporter, EmrB/QacA subfamily. (526 aa)    
Predicted Functional Partners:
Swoo_4521
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0452 secretion protein HlyD family protein.
 
 
 0.996
Swoo_0185
KEGG: sse:Ssed_0205 putative multidrug resistance efflux pump.
 
 
 0.810
Swoo_4195
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sse:Ssed_0774 type I secretion outer membrane protein, TolC family.
  
 
 0.588
Swoo_4523
PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_0454 GCN5-related N-acetyltransferase.
       0.563
Swoo_4520
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sse:Ssed_0451 transcriptional regulator, LysR family.
       0.546
Swoo_2712
PFAM: regulatory protein MarR; KEGG: sse:Ssed_1874 transcriptional regulator, MarR family.
 
  
 0.526
Swoo_2329
PFAM: major facilitator superfamily MFS_1; KEGG: sse:Ssed_2287 multidrug resistance protein D.
  
   
 0.447
Swoo_1024
PFAM: secretion protein HlyD family protein; KEGG: sse:Ssed_0975 secretion protein HlyD family protein.
  
 
 0.433
Swoo_4394
PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_3640 outer membrane efflux protein.
  
 
 0.405
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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