Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Swoo_4561PFAM: DNA repair protein RadC; KEGG: sse:Ssed_0385 DNA repair protein RadC; Belongs to the UPF0758 family. (225 aa)    
Predicted Functional Partners:
Swoo_4401
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
  
 0.825
Swoo_4399
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.769
Swoo_2036
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.
 
  
 0.765
Swoo_1818
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sse:Ssed_2827 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.721
Swoo_0325
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: sse:Ssed_4280 competence/damage-inducible protein CinA; Belongs to the CinA family.
     
 0.690
Swoo_0157
KEGG: sse:Ssed_0177 competence protein ComF.
 
    0.687
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
     
 0.650
rpmB
PFAM: ribosomal protein L28; KEGG: sse:Ssed_0386 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.632
Swoo_0040
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sse:Ssed_0037 DNA protecting protein DprA.
  
  
 0.630
rpmG
PFAM: ribosomal protein L33; KEGG: sse:Ssed_0387 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.622
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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