STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4565PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: spl:Spea_3841 peptidase S9 prolyl oligopeptidase active site domain protein. (657 aa)    
Predicted Functional Partners:
Swoo_1126
Peptidase S15; KEGG: spl:Spea_2277 peptidase S15.
  
     0.759
slmA
Transcriptional regulator, TetR family; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions.
       0.460
Swoo_4866
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_4462 ABC-2 type transporter.
  
     0.455
Swoo_0904
PFAM: beta-lactamase; KEGG: spc:Sputcn32_0856 beta-lactamase.
  
     0.435
folE
PFAM: GTP cyclohydrolase I; KEGG: spl:Spea_3842 GTP cyclohydrolase I.
       0.425
Swoo_2293
PFAM: protein of unknown function DUF885; KEGG: sse:Ssed_2317 protein of unknown function DUF885.
  
     0.417
Swoo_0898
KEGG: mmr:Mmar10_1711 coenzyme PQQ synthesis protein B.
 
  
 0.407
Swoo_3315
Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.407
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.