Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4573TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: sbm:Shew185_1871 HipA domain protein. (418 aa)    
Predicted Functional Partners:
Swoo_4574
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: sbm:Shew185_3350 putative transcriptional regulator, XRE family.
       0.788
Swoo_0614
KEGG: ppr:PBPRA2504 hypothetical protein.
  
     0.480
Swoo_4320
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sse:Ssed_0632 DNA-binding protein.
   
 
 0.467
Swoo_1922
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
   
 
 0.446
Swoo_4745
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_4364 transcriptional regulator protein-like protein.
   
 
 0.446
Swoo_0607
KEGG: ppr:PBPRA2498 hypothetical protein.
  
     0.445
Swoo_4570
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_0376 transcriptional regulator, XRE family.
  
  
 0.443
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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