STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4576KEGG: saz:Sama_0272 hypothetical protein. (956 aa)    
Predicted Functional Partners:
Swoo_1348
KEGG: sse:Ssed_1248 hypothetical protein.
  
     0.590
Swoo_4577
KEGG: spl:Spea_3873 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
       0.548
Swoo_3146
KEGG: sse:Ssed_1463 hypothetical protein.
  
     0.506
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
 
     0.491
Swoo_4419
KEGG: sse:Ssed_0542 MSHA biogenesis protein MshJ.
  
     0.456
Swoo_0262
KEGG: sse:Ssed_0263 hypothetical protein.
  
     0.449
Swoo_0647
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; Proprotein convertase P; KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
 
 0.418
Swoo_3230
KEGG: sse:Ssed_1451 methylation site containing protein.
  
     0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.