STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4577KEGG: spl:Spea_3873 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family. (230 aa)    
Predicted Functional Partners:
Swoo_4576
KEGG: saz:Sama_0272 hypothetical protein.
       0.548
Swoo_0007
PFAM: Na-Ca exchanger/integrin-beta4; LVIVD repeat protein; KEGG: sdn:Sden_0007 Na-Ca exchanger/integrin-beta4.
  
     0.529
Swoo_4011
KEGG: shn:Shewana3_2175 phage integrase family protein.
  
    0.488
Swoo_2856
PFAM: RDD domain containing protein; KEGG: sse:Ssed_1722 RDD domain containing protein.
  
     0.442
Swoo_4139
KEGG: sse:Ssed_3977 hypothetical protein.
  
     0.438
Swoo_1920
PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1517 GCN5-related N-acetyltransferase.
  
     0.431
Swoo_0310
PFAM: integrase family protein; KEGG: vpa:VP2909 hypothetical protein.
   
    0.416
Swoo_0311
PFAM: integrase family protein; KEGG: vpa:VP2910 hypothetical protein.
   
    0.416
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.416
Swoo_2382
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sse:Ssed_2244 phage integrase family protein; Belongs to the 'phage' integrase family.
   
    0.416
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.