STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4587PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_0331 AMP-dependent synthetase and ligase. (551 aa)    
Predicted Functional Partners:
Swoo_3176
PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_1098 alpha/beta hydrolase fold.
  
  
 0.834
Swoo_4259
PFAM: PGAP1 family protein; KEGG: sse:Ssed_0705 lipase-like protein.
     
 0.811
Swoo_4860
PFAM: AMP-dependent synthetase and ligase; KEGG: spl:Spea_4186 AMP-dependent synthetase and ligase.
  
  
 
0.704
Swoo_3995
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_3695 AMP-dependent synthetase and ligase.
 
 
0.667
Swoo_2322
PFAM: AMP-dependent synthetase and ligase; KEGG: sbn:Sbal195_1058 AMP-dependent synthetase and ligase.
 
 
0.665
Swoo_2941
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_1667 long-chain-fatty-acid--CoA ligase.
 
 
0.654
Swoo_2409
PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_1189 long-chain-fatty-acid--CoA ligase.
 
 
0.653
Swoo_2110
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_2523 AMP-dependent synthetase and ligase.
 
 
0.649
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.558
Swoo_0226
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: dge:Dgeo_1913 phenylacetic acid degradation protein PaaN.
  
 
 0.473
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.