STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4589PFAM: TPR repeat-containing protein; KEGG: sbl:Sbal_0349 tetratricopeptide TPR_2 repeat protein. (226 aa)    
Predicted Functional Partners:
Swoo_4590
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: slo:Shew_3505 integral membrane sensor signal transduction histidine kinase.
 
     0.768
Swoo_3866
KEGG: sbl:Sbal_0917 hypothetical protein.
  
     0.696
Swoo_0869
TIGRFAM: diguanylate cyclase; KEGG: sse:Ssed_0866 GGDEF domain protein.
  
     0.654
Swoo_4591
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: slo:Shew_3506 two component transcriptional regulator, LuxR family.
 
     0.652
Swoo_1032
PFAM: MltA-interacting MipA family protein; KEGG: sse:Ssed_0983 MltA-interacting MipA family protein.
  
     0.643
Swoo_3044
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_1608 transcriptional regulator, XRE family.
  
     0.603
Swoo_0654
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: sse:Ssed_0808 putative signal transduction protein.
  
     0.601
Swoo_4759
KEGG: sse:Ssed_4369 lipoprotein, putative.
  
     0.588
Swoo_4507
PFAM: protein of unknown function DUF107; KEGG: sse:Ssed_0463 protein of unknown function DUF107.
  
     0.585
Swoo_3444
KEGG: spl:Spea_1582 conserved hypothetical protein.
  
     0.584
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.