Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Swoo_4593KEGG: sse:Ssed_0328 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Swoo_0897
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: sse:Ssed_0895 single-stranded-DNA-specific exonuclease RecJ.
    
   0.657
Swoo_1690
Acetyltransferase; KEGG: sse:Ssed_2984 acetyltransferase.
    
   0.657
Swoo_3074
SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_1576 tetratricopeptide domain protein.
  
     0.607
Swoo_0983
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sse:Ssed_0936 TPR repeat-containing protein.
  
     0.551
Swoo_3075
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.542
Swoo_4866
PFAM: ABC-2 type transporter; KEGG: sse:Ssed_4462 ABC-2 type transporter.
  
     0.531
Swoo_2296
KEGG: sse:Ssed_2314 hypothetical protein.
  
     0.527
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.486
Swoo_2888
KEGG: sse:Ssed_1703 hypothetical protein.
  
     0.484
Swoo_2146
KEGG: sse:Ssed_2470 hypothetical protein.
  
     0.481
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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