Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4594KEGG: sse:Ssed_0327 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.984
Swoo_4596
KEGG: sfr:Sfri_0352 hypothetical protein.
 
 
 0.980
acpP-2
Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
 
 0.980
Swoo_4609
PFAM: Beta-ketoacyl synthase; KEGG: sse:Ssed_0313 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.967
Swoo_4595
PFAM: phospholipid/glycerol acyltransferase; KEGG: sse:Ssed_0326 phospholipid/glycerol acyltransferase.
 
    0.962
Swoo_4612
PFAM: Beta-ketoacyl synthase; KEGG: sse:Ssed_0310 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.960
Swoo_4600
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sse:Ssed_0321 thioester dehydrase family protein.
 
  
 0.958
Swoo_4598
KEGG: sse:Ssed_0323 hypothetical protein.
 
   
 0.937
Swoo_4606
Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sse:Ssed_0315 tryptophan halogenase.
 
   
 0.936
Swoo_4601
PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: sse:Ssed_0320 glycosyl transferase, family 2.
 
    0.930
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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