STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4604Conserved hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (270 aa)    
Predicted Functional Partners:
Swoo_4601
PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: sse:Ssed_0320 glycosyl transferase, family 2.
 
    0.956
Swoo_4598
KEGG: sse:Ssed_0323 hypothetical protein.
 
   
 0.954
Swoo_4605
PFAM: Patched family protein; KEGG: sse:Ssed_0316 hypothetical protein.
 
    0.954
Swoo_4603
KEGG: sse:Ssed_0318 thioesterase superfamily protein.
 
     0.952
Swoo_4599
KEGG: sse:Ssed_0322 hypothetical protein.
 
     0.951
Swoo_4600
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sse:Ssed_0321 thioester dehydrase family protein.
 
     0.950
Swoo_4606
Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sse:Ssed_0315 tryptophan halogenase.
 
     0.949
Swoo_4608
KEGG: sse:Ssed_0314 hypothetical protein.
 
     0.921
acpP-2
Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
    0.918
Swoo_4594
KEGG: sse:Ssed_0327 hypothetical protein.
 
   
 0.917
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.