Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4610PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sse:Ssed_0312 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ. (167 aa)    
Predicted Functional Partners:
Swoo_4600
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sse:Ssed_0321 thioester dehydrase family protein.
 
 
   0.986
Swoo_4609
PFAM: Beta-ketoacyl synthase; KEGG: sse:Ssed_0313 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.953
Swoo_4611
TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sse:Ssed_0311 3-oxoacyl-(acyl-carrier-protein) reductase, putative.
 
     0.945
Swoo_4598
KEGG: sse:Ssed_0323 hypothetical protein.
 
  
 0.930
Swoo_4601
PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: sse:Ssed_0320 glycosyl transferase, family 2.
 
   
 0.925
Swoo_4605
PFAM: Patched family protein; KEGG: sse:Ssed_0316 hypothetical protein.
 
   
 0.924
Swoo_4599
KEGG: sse:Ssed_0322 hypothetical protein.
 
     0.920
Swoo_4603
KEGG: sse:Ssed_0318 thioesterase superfamily protein.
 
     0.920
Swoo_4608
KEGG: sse:Ssed_0314 hypothetical protein.
 
     0.920
Swoo_4606
Tryptophan halogenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sse:Ssed_0315 tryptophan halogenase.
 
     0.918
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.