Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4614TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: spl:Spea_3905 thioesterase domain, putative. (158 aa)    
Predicted Functional Partners:
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
  
    0.786
Swoo_0621
Methionine repressor, MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis.
  
     0.563
Swoo_2115
PFAM: protein of unknown function DUF709; KEGG: sse:Ssed_2518 protein of unknown function DUF709.
  
     0.442
Swoo_4616
KEGG: sse:Ssed_0304 hypothetical protein.
       0.432
Swoo_4618
PFAM: ribonuclease BN; KEGG: sse:Ssed_0302 putative ribonuclease BN.
       0.406
Swoo_4619
KEGG: sse:Ssed_0301 hypothetical protein.
 
     0.406
Swoo_4617
Prolyl aminopeptidase; PFAM: alpha/beta hydrolase fold; KEGG: sse:Ssed_0303 alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
       0.401
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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