STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4641PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: scl:sce5713 cell division cycle protein 48-related protein; Belongs to the AAA ATPase family. (446 aa)    
Predicted Functional Partners:
Swoo_4639
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5715 TPR domain protein.
 
     0.831
Swoo_4640
KEGG: scl:sce5714 hypothetical protein.
       0.796
Swoo_2003
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1268 ABC transporter, ATP-binding protein.
  
   0.762
Swoo_0085
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_0122 ABC transporter-related protein.
  
     0.744
Swoo_4106
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_3953 ABC transporter-related protein.
  
     0.743
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
     0.731
Swoo_2053
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_2613 ABC transporter-related protein.
  
   0.724
Swoo_1431
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein.
  
     0.715
Swoo_4862
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spl:Spea_4188 ABC transporter related.
  
   0.706
Swoo_2897
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_1697 ABC transporter related.
  
     0.703
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.