Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4644PFAM: NMT1/THI5 like domain protein; KEGG: sse:Ssed_0291 ABC-type nitrate/sulfonate/bicarbonate transport system protein. (318 aa)    
Predicted Functional Partners:
Swoo_4645
KEGG: sse:Ssed_0290 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein.
     
 0.814
Swoo_4040
KEGG: mva:Mvan_0652 regulatory protein.
  
   
 0.605
Swoo_3780
KEGG: sse:Ssed_3881 putative aliphatic amidase expression-regulating protein.
  
   
 0.601
Swoo_1221
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sse:Ssed_1126 glutamate synthase (ferredoxin).
   
  
 0.573
Swoo_4646
PFAM: sodium:dicarboxylate symporter; KEGG: spl:Spea_3917 sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.548
Swoo_4647
KEGG: ppr:PBPRA2050 hypothetical protein.
       0.538
Swoo_4643
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: spl:Spea_3916 glutamine synthetase, type I.
     
 0.497
Swoo_3635
Alkanal monooxygenase (FMN-linked); PFAM: luciferase family protein; KEGG: vfi:VFA0921 LuxA, luciferase alpha chain.
  
  
 0.449
Swoo_2344
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: spl:Spea_2204 trimethyllysine dioxygenase.
  
  
 0.433
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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