STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4648PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; PKD domain containing protein; Carbohydrate-binding family V/XII; KEGG: pmy:Pmen_4109 peptidase S8 and S53, subtilisin, kexin, sedolisin. (699 aa)    
Predicted Functional Partners:
Swoo_0427
PFAM: peptidase domain protein; KEGG: pha:PSHAa2649 serine protease precursor.
 
     0.495
Swoo_1394
Conserved repeat domain protein; KEGG: pat:Patl_1035 peptidase S8 and S53, subtilisin, kexin, sedolisin; TIGRFAM: conserved repeat domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; proteinase inhibitor I9 subtilisin propeptide.
 
 
 0.490
Swoo_1398
KEGG: cps:CPS_2707 putative lipoprotein.
  
 
 0.484
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
  
   
 0.470
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.