Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4649KEGG: sse:Ssed_0284 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Swoo_2423
PFAM: Cbb3-type cytochrome oxidase component; KEGG: sse:Ssed_2213 Cbb3-type cytochrome oxidase component.
  
     0.667
Swoo_4650
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sse:Ssed_0283 signal transduction histidine kinase, nitrogen specific, NtrB.
       0.633
Swoo_0352
PFAM: LppC family lipoprotein; KEGG: sse:Ssed_4251 LppC family lipoprotein.
  
     0.559
cysZ
Protein of unknown function DUF540; High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway; Belongs to the CysZ family.
  
     0.541
Swoo_4730
TIGRFAM: general secretion pathway protein H; KEGG: sse:Ssed_4354 general secretion pathway protein H.
 
     0.537
Swoo_1542
KEGG: sse:Ssed_1430 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.521
Swoo_2606
KEGG: sse:Ssed_1994 hypothetical protein.
  
     0.518
Swoo_2581
TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: sse:Ssed_2024 alpha-L-glutamate ligase-like protein.
  
     0.494
Swoo_2553
PFAM: Rhomboid family protein; KEGG: sse:Ssed_2047 rhomboid family protein.
  
     0.487
Swoo_2732
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: spl:Spea_2565 Tol-Pal system TolA.
  
     0.474
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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