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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4650Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sse:Ssed_0283 signal transduction histidine kinase, nitrogen specific, NtrB. (348 aa)    
Predicted Functional Partners:
ntrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.992
Swoo_1303
PFAM: nitrogen regulatory protein P-II; KEGG: slo:Shew_1110 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.970
Swoo_4354
PFAM: conserved hypothetical protein; KEGG: slo:Shew_0429 hypothetical protein.
  
    0.751
Swoo_0980
PFAM: Rh family protein/ammonium transporter; KEGG: sse:Ssed_0934 Rh family protein/ammonium transporter.
 
 
 0.746
Swoo_1182
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sbn:Sbal195_3728 ammonium transporter.
 
 
 0.718
Swoo_0979
PFAM: nitrogen regulatory protein P-II; KEGG: sse:Ssed_0933 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.714
Swoo_1181
PFAM: nitrogen regulatory protein P-II; KEGG: shn:Shewana3_0779 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.714
Swoo_1704
Multi-sensor hybrid histidine kinase; KEGG: sse:Ssed_2941 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 
 0.714
Swoo_3452
Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_3303 two component transcriptional regulator, winged helix family.
  
 
 
 0.668
Swoo_1960
KEGG: pin:Ping_3719 sensor histidine kinase with ATPase domain; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
0.634
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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