Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4715PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0133 phospholipid/glycerol acyltransferase. (429 aa)    
Predicted Functional Partners:
Swoo_2322
PFAM: AMP-dependent synthetase and ligase; KEGG: sbn:Sbal195_1058 AMP-dependent synthetase and ligase.
  
 
 0.883
Swoo_2409
PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_1189 long-chain-fatty-acid--CoA ligase.
  
 
 0.871
Swoo_3995
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_3695 AMP-dependent synthetase and ligase.
  
 
 0.850
cysQ
3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
       0.777
Swoo_4716
PFAM: GCN5-related N-acetyltransferase; KEGG: spl:Spea_0158 GCN5-related N-acetyltransferase.
       0.773
Swoo_4037
PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_0154 AMP-dependent synthetase and ligase.
  
 
 0.702
Swoo_4718
PFAM: NUDIX hydrolase; KEGG: sse:Ssed_4346 NUDIX hydrolase.
       0.596
Swoo_2941
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_1667 long-chain-fatty-acid--CoA ligase.
 
 
 0.554
Swoo_2110
PFAM: AMP-dependent synthetase and ligase; KEGG: sse:Ssed_2523 AMP-dependent synthetase and ligase.
  
 
 0.524
Swoo_4123
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sse:Ssed_3967 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.482
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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