Swoo_4736 protein (Shewanella woodyi) - STRING interaction network

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Swoo_4736

PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family. (132 aa)

Predicted Functional Partners:

hslO

0.933

rplS

0.869

rplQ

0.827

rpmB

0.818

rpmH

0.815

rplT

0.799

rplM

0.797

rplN

0.797

rplV

0.796

rplU

0.795

Your Current Organism:

Shewanella woodyi

NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Swoo_4736	hslO	Swoo_4736	Swoo_4737	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	0.933
Swoo_4736	rplM	Swoo_4736	Swoo_4222	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.797
Swoo_4736	rplN	Swoo_4736	Swoo_4680	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.797
Swoo_4736	rplQ	Swoo_4736	Swoo_4664	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	PFAM: ribosomal protein L17; KEGG: sse:Ssed_4293 ribosomal protein L17.	0.827
Swoo_4736	rplS	Swoo_4736	Swoo_1257	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.869
Swoo_4736	rplT	Swoo_4736	Swoo_2488	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.799
Swoo_4736	rplU	Swoo_4736	Swoo_1004	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.795
Swoo_4736	rplV	Swoo_4736	Swoo_4685	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.796
Swoo_4736	rpmB	Swoo_4736	Swoo_4560	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	PFAM: ribosomal protein L28; KEGG: sse:Ssed_0386 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.818
Swoo_4736	rpmH	Swoo_4736	Swoo_4932	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	PFAM: ribosomal protein L34; KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.815
hslO	Swoo_4736	Swoo_4737	Swoo_4736	Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	0.933
rplM	Swoo_4736	Swoo_4222	Swoo_4736	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family.	0.797
rplM	rplN	Swoo_4222	Swoo_4680	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.995
rplM	rplQ	Swoo_4222	Swoo_4664	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L17; KEGG: sse:Ssed_4293 ribosomal protein L17.	0.988
rplM	rplS	Swoo_4222	Swoo_1257	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.988
rplM	rplT	Swoo_4222	Swoo_2488	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplM	rplU	Swoo_4222	Swoo_1004	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.985
rplM	rplV	Swoo_4222	Swoo_4685	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.995
rplM	rpmB	Swoo_4222	Swoo_4560	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L28; KEGG: sse:Ssed_0386 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.982
rplM	rpmH	Swoo_4222	Swoo_4932	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: ribosomal protein L34; KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.976

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