Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4736PFAM: RNA-binding S4 domain protein; KEGG: sse:Ssed_4360 RNA-binding S4 domain protein; Belongs to the HSP15 family. (132 aa)    
Predicted Functional Partners:
hslO
Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.
  
  
 0.951
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.896
rplQ
PFAM: ribosomal protein L17; KEGG: sse:Ssed_4293 ribosomal protein L17.
   
 
 0.868
rpmA
PFAM: ribosomal protein L27; KEGG: shm:Shewmr7_3124 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.839
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
    
 
 0.839
rpmB
PFAM: ribosomal protein L28; KEGG: sse:Ssed_0386 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.838
rpmH
PFAM: ribosomal protein L34; KEGG: shw:Sputw3181_4095 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
   0.835
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.825
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.821
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: spl:Spea_2498 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.821
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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