STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4743Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; KEGG: sde:Sde_2870 putative transcriptional regulator, CadC. (294 aa)    
Predicted Functional Partners:
Swoo_4742
KEGG: sde:Sde_2844 hypothetical protein.
       0.516
Swoo_4744
KEGG: sse:Ssed_4363 hypothetical protein.
       0.465
Swoo_4745
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sse:Ssed_4364 transcriptional regulator protein-like protein.
       0.437
Swoo_4741
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bcz:BCZK2143 hypothetical protein.
       0.433
Swoo_2661
Transcriptional regulator, CadC; PFAM: transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0530 hypothetical protein.
 
  
 0.428
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.