STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4775PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sse:Ssed_4384 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Swoo_4774
KEGG: sse:Ssed_4383 hypothetical protein.
 
  
 0.978
Swoo_4776
KEGG: sse:Ssed_4385 hypothetical protein.
 
  
 0.968
Swoo_4063
KEGG: sbn:Sbal195_3518 hypothetical protein.
 
  
 0.860
Swoo_1789
KEGG: sse:Ssed_2856 hypothetical protein.
 
  
 0.806
Swoo_4773
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sse:Ssed_4382 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.784
Swoo_4772
KEGG: sse:Ssed_4381 hypothetical protein.
       0.774
Swoo_1890
PFAM: DoxX family protein; KEGG: sse:Ssed_2748 DoxX family protein.
 
  
 0.625
Swoo_4488
Proprotein convertase P; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vpa:VPA1071 putative extracellular serine protease; Belongs to the peptidase S8 family.
   
    0.565
Swoo_0491
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; Na-Ca exchanger/integrin-beta4; KEGG: sbn:Sbal195_4098 outer membrane adhesin like proteiin.
  
    0.504
Swoo_1517
PFAM: DoxX family protein; KEGG: vfi:VFA0336 hypothetical membrane spanning protein.
  
  
 0.460
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.