STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4780PFAM: protein of unknown function UPF0057; KEGG: slo:Shew_0100 protein of unknown function UPF0057. (54 aa)    
Predicted Functional Partners:
Swoo_4781
TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: sse:Ssed_4390 pseudouridine synthase Rlu family protein, TIGR01621.
       0.723
Swoo_4782
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_4391 integral membrane sensor signal transduction histidine kinase.
       0.642
Swoo_4783
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_4392 two component transcriptional regulator, winged helix family.
       0.642
Swoo_4784
KEGG: sse:Ssed_4393 hypothetical protein.
       0.642
Swoo_1048
Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; KEGG: sse:Ssed_0995 hypothetical protein.
    
   0.480
Swoo_4658
KEGG: sse:Ssed_4286 cytochrome c, class I.
    
   0.480
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.