Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Swoo_4784KEGG: sse:Ssed_4393 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Swoo_4785
PFAM: conserved hypothetical protein; KEGG: sse:Ssed_4394 hypothetical protein.
  
    0.983
Swoo_1066
PFAM: conserved hypothetical protein; KEGG: spl:Spea_2251 conserved hypothetical protein.
  
    0.883
Swoo_4782
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_4391 integral membrane sensor signal transduction histidine kinase.
       0.829
Swoo_2045
KEGG: sse:Ssed_2621 hypothetical protein.
   
    0.821
Swoo_4783
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_4392 two component transcriptional regulator, winged helix family.
  
    0.819
Swoo_4781
TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: sse:Ssed_4390 pseudouridine synthase Rlu family protein, TIGR01621.
  
   0.742
Swoo_4780
PFAM: protein of unknown function UPF0057; KEGG: slo:Shew_0100 protein of unknown function UPF0057.
       0.642
Swoo_1518
PFAM: CBS domain containing protein; KEGG: spl:Spea_1244 CBS domain containing protein.
   
    0.618
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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