STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Swoo_4785PFAM: conserved hypothetical protein; KEGG: sse:Ssed_4394 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Swoo_4784
KEGG: sse:Ssed_4393 hypothetical protein.
  
    0.978
Swoo_4783
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_4392 two component transcriptional regulator, winged helix family.
  
    0.687
Swoo_3263
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sse:Ssed_3143 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
    0.611
Swoo_0661
KEGG: sse:Ssed_3874 hypothetical protein.
  
    0.595
Swoo_3379
PFAM: Propeptide PepSY amd peptidase M4; KEGG: sse:Ssed_3245 propeptide, PepSY amd peptidase M4.
  
    0.595
Swoo_0242
TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: spl:Spea_3965 polysulphide reductase NrfD.
  
     0.589
Swoo_4787
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.545
Swoo_4788
TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sse:Ssed_4397 molybdenum ABC transporter, periplasmic molybdate-binding protein.
       0.545
Swoo_1518
PFAM: CBS domain containing protein; KEGG: spl:Spea_1244 CBS domain containing protein.
   
  
 0.536
Swoo_4786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sse:Ssed_4395 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
       0.516
Your Current Organism:
Shewanella woodyi
NCBI taxonomy Id: 392500
Other names: S. woodyi ATCC 51908, Shewanella woodyi ATCC 51908, Shewanella woodyi str. ATCC 51908, Shewanella woodyi strain ATCC 51908
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.